Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tadZType II/IV secretion system ATPase TadZ. (420 aa)    
Predicted Functional Partners:
tadB
Flp pilus assembly protein TadB.
 
 
 0.998
cpaB
Flp pilus assembly protein CpaB.
 
 
 0.998
tadC
Type II/IV secretion system protein TadC.
 
 
 0.997
cpaC
Type II/IV secretion system secretin CpaC; Belongs to the bacterial secretin family.
 
 
 0.997
tadA
Type II/IV secretion system ATP hydrolase TadA.
 
 
 0.988
cpaD
Flp pilus assembly protein CpaD.
 
  
  0.968
CSIRO_1473
CpaC-like protein.
 
 
 0.962
CSIRO_1474
CpaE-like protein.
 
  
 0.957
cpaA
Type IV prepilin peptidase CpaA.
 
  
 0.945
CSIRO_1471
Flp pilus assembly protein.
 
  
 0.932
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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