Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
cpaDFlp pilus assembly protein CpaD. (245 aa)    
Predicted Functional Partners:
tadZ
Type II/IV secretion system ATPase TadZ.
 
  
  0.968
tadC
Type II/IV secretion system protein TadC.
 
  
 0.943
cpaC
Type II/IV secretion system secretin CpaC; Belongs to the bacterial secretin family.
 
  
 0.941
tadB
Flp pilus assembly protein TadB.
 
  
 0.937
cpaB
Flp pilus assembly protein CpaB.
 
  
  0.911
cpaA
Type IV prepilin peptidase CpaA.
 
     0.880
tadA
Type II/IV secretion system ATP hydrolase TadA.
 
  
  0.870
CSIRO_1473
CpaC-like protein.
 
  
 0.833
tadD
Flp pilus assembly protein TadD.
 
   
 0.799
CSIRO_1475
Hypothetical protein.
 
     0.796
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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