STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpaDFlp pilus assembly protein CpaD. (245 aa)    
Predicted Functional Partners:
tadZ
Type II/IV secretion system ATPase TadZ.
 
     0.950
cpaC
Type II/IV secretion system secretin CpaC; Belongs to the bacterial secretin family.
 
   
 0.908
tadC
Type II/IV secretion system protein TadC.
 
     0.903
tadB
Flp pilus assembly protein TadB.
 
     0.893
cpaA
Type IV prepilin peptidase CpaA.
 
     0.860
cpaB
Flp pilus assembly protein CpaB.
 
     0.858
tadA
Type II/IV secretion system ATP hydrolase TadA.
 
     0.816
CSIRO_1475
Hypothetical protein.
 
     0.793
tadD
Flp pilus assembly protein TadD.
 
     0.781
CSIRO_1474
CpaE-like protein.
 
     0.781
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.