STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpaCType II/IV secretion system secretin CpaC; Belongs to the bacterial secretin family. (475 aa)    
Predicted Functional Partners:
cpaB
Flp pilus assembly protein CpaB.
 
  
 0.987
tadZ
Type II/IV secretion system ATPase TadZ.
 
  
 0.973
tadC
Type II/IV secretion system protein TadC.
 
  
 0.963
tadA
Type II/IV secretion system ATP hydrolase TadA.
  
 0.959
tadB
Flp pilus assembly protein TadB.
 
  
 0.955
cpaD
Flp pilus assembly protein CpaD.
 
   
 0.908
cpaA
Type IV prepilin peptidase CpaA.
 
  
 0.894
tadD
Flp pilus assembly protein TadD.
 
  
 0.807
CSIRO_1474
CpaE-like protein.
 
  
 0.758
trbB
Conjugative transfer protein TrbB.
  
 0.712
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.