Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1504ErfK/YbiS/YcfS/YnhG-like protein. (268 aa)    
Predicted Functional Partners:
CSIRO_1505
Hypothetical protein.
       0.721
CSIRO_1502
Putative permease.
     
 0.618
CSIRO_1503
Hypothetical protein.
       0.593
CSIRO_1501
Hypothetical protein.
  
    0.479
ftsI
Cell division protein FtsI.
  
  
 0.456
CSIRO_1506
Hypothetical protein.
       0.454
CSIRO_0655
Putative exported protein.
 
   
 0.445
CSIRO_2357
Transpeptidase / transglycosylase; Bifunctional.
  
  
 0.437
CSIRO_3383
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
    
 0.433
CSIRO_1527
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
  
 0.429
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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