Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1552Hypothetical protein. (346 aa)    
Predicted Functional Partners:
CSIRO_1553
Putative 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase.
       0.837
paaN
Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase.
   
 0.687
CSIRO_1554
glutamyl-Q-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.641
CSIRO_3963
Hypothetical protein.
  
  0.632
CSIRO_1402
long-chain-fatty-acid--CoA ligase.
  
 
  0.592
CSIRO_3242
Short-chain dehydrogenase, associated with 2-hydroxychromene-2-carboxylate isomerase family protein.
  
  
  0.567
CSIRO_2231
Hypothetical protein.
  
 
  0.549
CSIRO_1723
Ubiquinol--cytochrome c reductase cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
     
 0.547
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
     
  0.544
CSIRO_0557
Phosphoglucosamine mutase/ Phosphomannomutase; Bifunctional.
     
  0.544
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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