STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1635Homospermidine synthase(HSS). (479 aa)    
Predicted Functional Partners:
CSIRO_1642
Ornithine decarboxylase/ Arginine decarboxylase; Bifunctional; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
 
     0.724
CSIRO_1636
Regulator of nucleoside diphosphate kinase.
 
     0.582
CSIRO_1641
GCN5-like N-acetyltransferase.
 
     0.560
CSIRO_0878
Hypothetical protein.
  
     0.453
CSIRO_0505
Hypothetical protein.
  
     0.435
CSIRO_0778
ATP-dependent RNA helicase; Belongs to the DEAD box helicase family.
   
    0.412
CSIRO_0837
Pseudouridine synthase.
  
     0.408
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.