STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1637TRAP dicarboxylate transporter DctM subunit. (434 aa)    
Predicted Functional Partners:
CSIRO_1638
TRAP dicarboxylate transporter DctQ subunit.
 
 0.992
CSIRO_1639
TRAP transporter solute receptor.
 
 
 0.982
CSIRO_4003
TRAP-like transport system, small permease component.
 
 0.911
CSIRO_4004
TRAP-like C4-dicarboxylate transport system, periplasmic component.
 
 
 0.895
CSIRO_1006
TRAP-type C4-dicarboxylate transport system.
  
  
  0.821
CSIRO_1007
Putative DctQ-like TRAP transporter.
  
  0.785
CSIRO_2365
Sensory box histidine kinase/response regulator.
     
 0.727
CSIRO_0461
TRAP transporter solute receptor; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
  
  
  0.719
dctQ
TRAP dicarboxylate transporter, DctQ subunit.
 
  
  0.677
paaN
Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase.
     
 0.668
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.