STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1654Outer membrane protein/protective antigen. (553 aa)    
Predicted Functional Partners:
CSIRO_3230
Lipopolysaccharide biosynthesis.
 
  
 0.936
CSIRO_3233
Putative glycosyl transferase.
 
  
  0.848
CSIRO_3229
Hypothetical protein.
 
     0.772
cpaD
Flp pilus assembly protein CpaD.
  
     0.763
CSIRO_3234
Hypothetical protein.
 
     0.758
CSIRO_3718
Hypothetical protein.
 
     0.735
CSIRO_0273
Hypothetical protein.
 
     0.726
CSIRO_3231
Capsule polysaccharide export protein.
 
  
  0.713
CSIRO_2403
Hypothetical protein.
  
     0.711
cpaA
Type IV prepilin peptidase CpaA.
  
     0.707
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.