Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1688Hypothetical protein. (205 aa)    
Predicted Functional Partners:
CSIRO_1249
Benzoyl-CoA oxygenase.
    
 0.671
CSIRO_1851
Glyoxalase family protein.
  
 
  0.648
CSIRO_0258
Riboflavin kinase/ FMN adenylyltransferase; Bifunctional; Belongs to the ribF family.
    
 0.616
CSIRO_2234
Cytochrome P450.
     
 0.540
CSIRO_1687
Transcriptional regulator, TetR family.
       0.539
CSIRO_1451
Hypothetical protein.
  
 
 0.526
CSIRO_2021
4-hydroxyphenylacetate 3-monooxygenase.
  
 
 0.510
CSIRO_1689
butyryl-CoA dehydrogenase.
    
  0.508
CSIRO_1686
Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.488
CSIRO_3582
Nitroreductase.
  
 
 0.477
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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