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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1743FAD-dependent oxidoreductase. (428 aa)    
Predicted Functional Partners:
CSIRO_1851
Glyoxalase family protein.
    
 0.688
CSIRO_2077
Isoquinoline 1-oxidoreductase beta subunit.
    
 0.602
CSIRO_2234
Cytochrome P450.
  
 0.600
CSIRO_3111
Putative cytochrome P450 hydroxylase.
  
 0.593
CSIRO_1744
LysR family regulatory protein; Belongs to the LysR transcriptional regulatory family.
       0.592
CSIRO_0140
Putative sterol desaturase.
   
 0.588
ubiG
3-demethylubiquinone-9 3-methyltransferase; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family.
   
 0.570
CSIRO_3987
Protocatechuate 3,4-dioxygenase beta chain.
 
  
 0.536
CSIRO_3861
Hypothetical protein.
   
 0.532
CSIRO_3122
Cyclase.
 
  
 0.521
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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