Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1766Hypothetical protein. (75 aa)    
Predicted Functional Partners:
CSIRO_1767
Putative O-methyltransferase; Belongs to the methyltransferase superfamily.
       0.837
CSIRO_1765
Bifunctional; octaprenyl-diphosphate synthase/ dimethylallyltransferase/ geranyltranstransferase (farnesyldiphosphate synthase)/ geranylgeranyl pyrophosphate synthetase; Belongs to the FPP/GGPP synthase family.
       0.676
CSIRO_1573
Methyl-accepting chemotaxis protein.
 
     0.655
CSIRO_1709
Putative membrane protein; Overlaps another CDS with the same product name.
  
     0.611
CSIRO_1708
Threonine dehydrogenase-like protein.
  
     0.570
CSIRO_1844
Metal ion dependent adhesion motif-containing protein.
  
     0.562
CSIRO_1768
Macromolecule degradation protein.
 
     0.550
CSIRO_0527
Two-component hybrid sensor and regulator.
  
     0.547
CSIRO_3389
Hypothetical protein.
  
     0.504
CSIRO_1459
NLP/P60 family lipoprotein.
 
     0.483
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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