Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1799Hypothetical protein. (168 aa)    
Predicted Functional Partners:
CSIRO_1798
GDP-mannose mannosyl hydrolase; Belongs to the Nudix hydrolase family.
       0.837
CSIRO_0454
Hypothetical protein.
  
     0.766
CSIRO_1136
Hypothetical protein.
  
     0.716
CSIRO_3567
Hpt domain-containing protein.
  
     0.710
CSIRO_2315
Hypothetical protein.
  
     0.700
CSIRO_1800
Protein of unknown function DUF159; Belongs to the SOS response-associated peptidase family.
       0.683
fliH
Flagellar assembly protein FliH.
  
     0.664
CSIRO_3568
Hypothetical protein.
  
     0.648
CSIRO_3765
Hypothetical protein.
  
     0.631
fliX
Flagellar trans-acting factor FliX.
  
     0.608
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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