close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1813medium-chain-fatty-acid--CoA ligase. (542 aa)    
Predicted Functional Partners:
rplF
LSU ribosomal protein L6p; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.823
CSIRO_1943
Tungsten-containing formate dehydrogenase beta subunit.
    
   0.814
CSIRO_3016
Phosphatidylglycerophosphatase B.
    
  0.805
CSIRO_1307
enoyl-CoA hydratase/ 3-hydroxyacyl-CoA dehydrogenase/ 3-hydroxybutyryl-CoA epimerase; Bifunctional; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.739
CSIRO_3536
acyl-CoA dehydrogenase.
  
 
  0.692
CSIRO_1439
Bifunctional; enoyl-CoA hydratase/ delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase/ 3-hydroxyacyl-CoA dehydrogenase/ 3-hydroxybutyryl-CoA epimerase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.681
CSIRO_1691
enoyl-CoA hydratase/ 3-hydroxyacyl-CoA dehydrogenase/ 3-hydroxybutyryl-CoA epimerase; Bifunctional.
  
 0.681
CSIRO_2812
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 
 0.647
CSIRO_0713
acyl-CoA dehydrogenase family protein.
  
 
  0.624
CSIRO_2327
methylmalonyl-CoA mutase.
    
 0.623
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.