CSIRO_1825 protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CSIRO_1825

DnaJ-like molecular chaperone. (340 aa)

Predicted Functional Partners:

dnaK

0.998

CSIRO_4236

0.959

CSIRO_1943

0.955

grpE

0.939

rplN

0.886

rplM

0.885

rplQ

0.876

rplO

0.870

rplC

0.869

rplK

0.868

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_1825	CSIRO_1943	CSIRO_1825	CSIRO_1943	DnaJ-like molecular chaperone.	Tungsten-containing formate dehydrogenase beta subunit.	0.955
CSIRO_1825	CSIRO_4236	CSIRO_1825	CSIRO_4236	DnaJ-like molecular chaperone.	Hypothetical protein.	0.959
CSIRO_1825	dnaK	CSIRO_1825	CSIRO_0890	DnaJ-like molecular chaperone.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.998
CSIRO_1825	grpE	CSIRO_1825	CSIRO_0892	DnaJ-like molecular chaperone.	Heat shock protein GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP- [...]	0.939
CSIRO_1825	rplC	CSIRO_1825	CSIRO_3500	DnaJ-like molecular chaperone.	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.869
CSIRO_1825	rplK	CSIRO_1825	CSIRO_3523	DnaJ-like molecular chaperone.	LSU ribosomal protein L11p; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.868
CSIRO_1825	rplM	CSIRO_1825	CSIRO_3219	DnaJ-like molecular chaperone.	LSU ribosomal protein L13p; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.885
CSIRO_1825	rplN	CSIRO_1825	CSIRO_3490	DnaJ-like molecular chaperone.	LSU ribosomal protein L14p; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.886
CSIRO_1825	rplO	CSIRO_1825	CSIRO_3481	DnaJ-like molecular chaperone.	LSU ribosomal protein L15p; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.870
CSIRO_1825	rplQ	CSIRO_1825	CSIRO_3475	DnaJ-like molecular chaperone.	LSU ribosomal protein L17p.	0.876
CSIRO_1943	CSIRO_1825	CSIRO_1943	CSIRO_1825	Tungsten-containing formate dehydrogenase beta subunit.	DnaJ-like molecular chaperone.	0.955
CSIRO_1943	dnaK	CSIRO_1943	CSIRO_0890	Tungsten-containing formate dehydrogenase beta subunit.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.437
CSIRO_4236	CSIRO_1825	CSIRO_4236	CSIRO_1825	Hypothetical protein.	DnaJ-like molecular chaperone.	0.959
CSIRO_4236	dnaK	CSIRO_4236	CSIRO_0890	Hypothetical protein.	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.999
CSIRO_4236	grpE	CSIRO_4236	CSIRO_0892	Hypothetical protein.	Heat shock protein GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP- [...]	0.876
dnaK	CSIRO_1825	CSIRO_0890	CSIRO_1825	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	DnaJ-like molecular chaperone.	0.998
dnaK	CSIRO_1943	CSIRO_0890	CSIRO_1943	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	Tungsten-containing formate dehydrogenase beta subunit.	0.437
dnaK	CSIRO_4236	CSIRO_0890	CSIRO_4236	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	Hypothetical protein.	0.999
dnaK	grpE	CSIRO_0890	CSIRO_0892	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	Heat shock protein GrpE; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP- [...]	0.999
dnaK	rplC	CSIRO_0890	CSIRO_3500	Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.	LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.892