Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
CSIRO_1856Hydrogen peroxide response regulator; Belongs to the LysR transcriptional regulatory family. (297 aa)    
Predicted Functional Partners:
CSIRO_1861
NAD-dependent formate dehydrogenase delta subunit.
 
   
 0.822
CSIRO_1859
NAD-dependent formate dehydrogenase alpha subunit.
 
     0.806
CSIRO_1860
Formate dehydrogenase chain D; Required for formate dehydrogenase (FDH) activity. Belongs to the FdhD family.
 
     0.715
CSIRO_1857
NAD-dependent formate dehydrogenase gamma subunit.
 
     0.685
CSIRO_1858
NAD-dependent formate dehydrogenase beta subunit.
 
     0.670
yeiE
Transcriptional regulator YeiE; Belongs to the LysR transcriptional regulatory family.
  
     0.522
CSIRO_1912
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.512
CSIRO_1855
Molybdopterin binding domain-containing protein.
       0.488
CSIRO_0268
Glutamate synthase (NADPH) large chain.
     
 0.442
cynS
Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.
  
  
 0.424
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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