STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1856Hydrogen peroxide response regulator; Belongs to the LysR transcriptional regulatory family. (297 aa)    
Predicted Functional Partners:
CSIRO_1861
NAD-dependent formate dehydrogenase delta subunit.
 
     0.815
CSIRO_1859
NAD-dependent formate dehydrogenase alpha subunit.
 
     0.790
CSIRO_1860
Formate dehydrogenase chain D; Required for formate dehydrogenase (FDH) activity. Belongs to the FdhD family.
 
     0.692
CSIRO_1857
NAD-dependent formate dehydrogenase gamma subunit.
 
     0.644
CSIRO_1858
NAD-dependent formate dehydrogenase beta subunit.
 
     0.627
yeiE
Transcriptional regulator YeiE; Belongs to the LysR transcriptional regulatory family.
  
     0.522
CSIRO_1912
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.512
CSIRO_1855
Molybdopterin binding domain-containing protein.
       0.488
CSIRO_1862
Permease.
 
     0.405
cynS
Cyanate hydratase; Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide; Belongs to the cyanase family.
  
  
  0.403
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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