STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1862Permease. (551 aa)    
Predicted Functional Partners:
CSIRO_1861
NAD-dependent formate dehydrogenase delta subunit.
 
     0.727
CSIRO_1860
Formate dehydrogenase chain D; Required for formate dehydrogenase (FDH) activity. Belongs to the FdhD family.
 
     0.718
CSIRO_1859
NAD-dependent formate dehydrogenase alpha subunit.
 
  
  0.680
CSIRO_1729
Anthranilate synthase.
    
 0.643
CSIRO_1448
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.603
CSIRO_4169
Putative oxalate:formate antiporter.
  
  
0.597
CSIRO_1858
NAD-dependent formate dehydrogenase beta subunit.
 
     0.486
CSIRO_1857
NAD-dependent formate dehydrogenase gamma subunit.
       0.459
CSIRO_1863
Hypothetical protein.
       0.444
CSIRO_3638
MFS permease.
  
  
  0.431
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.