Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
CSIRO_1869Transcriptional regulator, AraC family. (289 aa)    
Predicted Functional Partners:
CSIRO_1886
Transcriptional regulatory protein.
  
 
 0.752
CSIRO_2585
Transcriptional regulator, AraC family.
  
 
 0.557
CSIRO_0077
Regulatory protein; Belongs to the LysR transcriptional regulatory family.
  
    0.496
CSIRO_0737
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.490
CSIRO_1912
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.460
CSIRO_2563
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
    0.451
CSIRO_1867
Putative transcriptional regulator, AraC family.
  
 
 0.423
CSIRO_1870
Putative ABC transporter subunit.
       0.421
lexA
SOS-response repressor and protease LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
  
   0.408
CSIRO_3343
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
    0.401
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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