Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1884Transcriptional regulator, XRE family. (474 aa)    
Predicted Functional Partners:
CSIRO_1881
2-methylcitrate dehydratase.
 
  
 0.832
CSIRO_3740
Aerobic fumarate hydratase class 1; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
     
  0.656
CSIRO_2662
NAD-dependent malic enzyme.
    
 0.647
nadE
NAD synthetase/ Glutamine amidotransferase chain of NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.644
thiS
Sulfur carrier protein ThiS.
     
  0.585
CSIRO_1883
Hypothetical protein.
       0.569
thiF
Sulfur carrier protein adenylyltransferase ThiF.
   
 
  0.546
CSIRO_1880
2-methylcitrate synthase; Belongs to the citrate synthase family.
  
  
 0.509
CSIRO_1885
Hypothetical protein.
       0.497
CSIRO_1698
Isocitrate lyase.
 
   
 0.494
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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