CSIRO_1886 protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

CSIRO_1886

Transcriptional regulatory protein. (363 aa)

Predicted Functional Partners:

CSIRO_1869

0.752

CSIRO_0268

0.711

CSIRO_2662

0.657

CSIRO_1808

0.648

CSIRO_1887

0.584

CSIRO_1889

0.580

CSIRO_3807

0.579

CSIRO_3985

0.575

CSIRO_1549

0.514

CSIRO_0291

0.500

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CSIRO_0268	CSIRO_0291	Glutamate synthase (NADPH) large chain.	Transcriptional regulator, AraC family.	0.711
CSIRO_0268	CSIRO_1808	Glutamate synthase (NADPH) large chain.	3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.	0.594
CSIRO_0268	CSIRO_1886	Glutamate synthase (NADPH) large chain.	Transcriptional regulatory protein.	0.711
CSIRO_0268	CSIRO_2662	Glutamate synthase (NADPH) large chain.	NAD-dependent malic enzyme.	0.539
CSIRO_0268	CSIRO_3807	Glutamate synthase (NADPH) large chain.	Rranscriptional regulator, AraC family.	0.711
CSIRO_0268	CSIRO_3985	Glutamate synthase (NADPH) large chain.	AraC family transcriptional regulator.	0.749
CSIRO_0291	CSIRO_0268	Transcriptional regulator, AraC family.	Glutamate synthase (NADPH) large chain.	0.711
CSIRO_0291	CSIRO_1808	Transcriptional regulator, AraC family.	3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.	0.648
CSIRO_0291	CSIRO_1886	Transcriptional regulator, AraC family.	Transcriptional regulatory protein.	0.500
CSIRO_0291	CSIRO_2662	Transcriptional regulator, AraC family.	NAD-dependent malic enzyme.	0.657
CSIRO_1549	CSIRO_1886	Transcriptional regulator, AraC family.	Transcriptional regulatory protein.	0.514
CSIRO_1549	CSIRO_3985	Transcriptional regulator, AraC family.	AraC family transcriptional regulator.	0.424
CSIRO_1808	CSIRO_0268	3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.	Glutamate synthase (NADPH) large chain.	0.594
CSIRO_1808	CSIRO_0291	3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.	Transcriptional regulator, AraC family.	0.648
CSIRO_1808	CSIRO_1886	3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.	Transcriptional regulatory protein.	0.648
CSIRO_1808	CSIRO_3807	3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.	Rranscriptional regulator, AraC family.	0.648
CSIRO_1808	CSIRO_3985	3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.	AraC family transcriptional regulator.	0.648
CSIRO_1869	CSIRO_1886	Transcriptional regulator, AraC family.	Transcriptional regulatory protein.	0.752
CSIRO_1886	CSIRO_0268	Transcriptional regulatory protein.	Glutamate synthase (NADPH) large chain.	0.711
CSIRO_1886	CSIRO_0291	Transcriptional regulatory protein.	Transcriptional regulator, AraC family.	0.500