STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1887TonB-dependent siderophore receptor. (734 aa)    
Predicted Functional Partners:
CSIRO_1889
AmpG permease.
 
     0.933
CSIRO_1888
Hypothetical protein.
       0.777
CSIRO_1226
Putative energy transducer TonB.
 
 0.719
CSIRO_0483
TolA protein.
  
 0.680
CSIRO_3361
TolA protein.
  
 0.680
CSIRO_1978
Hypothetical protein.
  
 0.645
CSIRO_1886
Transcriptional regulatory protein.
 
     0.584
CSIRO_2161
TonB-dependent hemin ferrichrome receptor.
  
 
 0.536
CSIRO_0484
Biopolymer transport protein ExbD/TolR.
  
 
 0.530
CSIRO_1227
Biopolymer transport protein ExbD/TolR.
  
 
 0.530
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.