ccoN protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ccoN

Cytochrome c oxidase subunit CcoN; Belongs to the heme-copper respiratory oxidase family. (550 aa)

Predicted Functional Partners:

ccoO

0.999

ccoP

0.999

CSIRO_1723

0.997

ccoH

0.994

ccoQ

0.991

ccoG

0.988

CSIRO_3827

0.962

CSIRO_2077

0.959

soxX

0.957

CSIRO_2513

0.957

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_1723	CSIRO_2077	CSIRO_1723	CSIRO_2077	Ubiquinol--cytochrome c reductase cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Isoquinoline 1-oxidoreductase beta subunit.	0.999
CSIRO_1723	CSIRO_2513	CSIRO_1723	CSIRO_2513	Ubiquinol--cytochrome c reductase cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c4.	0.929
CSIRO_1723	CSIRO_3827	CSIRO_1723	CSIRO_3827	Ubiquinol--cytochrome c reductase cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Putative diheme cytochrome c-553.	0.999
CSIRO_1723	ccoG	CSIRO_1723	CSIRO_1905	Ubiquinol--cytochrome c reductase cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase biogenesis protein CcoG.	0.831
CSIRO_1723	ccoH	CSIRO_1723	CSIRO_1906	Ubiquinol--cytochrome c reductase cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase biogenesis protein CcoH.	0.978
CSIRO_1723	ccoN	CSIRO_1723	CSIRO_1901	Ubiquinol--cytochrome c reductase cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase subunit CcoN; Belongs to the heme-copper respiratory oxidase family.	0.997
CSIRO_1723	ccoO	CSIRO_1723	CSIRO_1902	Ubiquinol--cytochrome c reductase cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase subunit CcoO.	0.998
CSIRO_1723	ccoP	CSIRO_1723	CSIRO_1904	Ubiquinol--cytochrome c reductase cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase subunit CcoP; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.	0.999
CSIRO_1723	ccoQ	CSIRO_1723	CSIRO_1903	Ubiquinol--cytochrome c reductase cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase subunit CcoQ.	0.770
CSIRO_1723	soxX	CSIRO_1723	CSIRO_2113	Ubiquinol--cytochrome c reductase cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Sulfur oxidation protein SoxX.	0.999
CSIRO_2077	CSIRO_1723	CSIRO_2077	CSIRO_1723	Isoquinoline 1-oxidoreductase beta subunit.	Ubiquinol--cytochrome c reductase cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
CSIRO_2077	CSIRO_2513	CSIRO_2077	CSIRO_2513	Isoquinoline 1-oxidoreductase beta subunit.	Cytochrome c4.	0.503
CSIRO_2077	ccoH	CSIRO_2077	CSIRO_1906	Isoquinoline 1-oxidoreductase beta subunit.	Cytochrome c oxidase biogenesis protein CcoH.	0.774
CSIRO_2077	ccoN	CSIRO_2077	CSIRO_1901	Isoquinoline 1-oxidoreductase beta subunit.	Cytochrome c oxidase subunit CcoN; Belongs to the heme-copper respiratory oxidase family.	0.959
CSIRO_2077	ccoO	CSIRO_2077	CSIRO_1902	Isoquinoline 1-oxidoreductase beta subunit.	Cytochrome c oxidase subunit CcoO.	0.957
CSIRO_2077	ccoQ	CSIRO_2077	CSIRO_1903	Isoquinoline 1-oxidoreductase beta subunit.	Cytochrome c oxidase subunit CcoQ.	0.770
CSIRO_2513	CSIRO_1723	CSIRO_2513	CSIRO_1723	Cytochrome c4.	Ubiquinol--cytochrome c reductase cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.929
CSIRO_2513	CSIRO_2077	CSIRO_2513	CSIRO_2077	Cytochrome c4.	Isoquinoline 1-oxidoreductase beta subunit.	0.503
CSIRO_2513	CSIRO_3827	CSIRO_2513	CSIRO_3827	Cytochrome c4.	Putative diheme cytochrome c-553.	0.413
CSIRO_2513	ccoN	CSIRO_2513	CSIRO_1901	Cytochrome c4.	Cytochrome c oxidase subunit CcoN; Belongs to the heme-copper respiratory oxidase family.	0.957