Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1931Hypothetical protein. (173 aa)    
Predicted Functional Partners:
CSIRO_1932
Hypothetical protein.
 
    0.987
CSIRO_1929
Hypothetical protein.
 
     0.940
CSIRO_1928
Hypothetical protein.
 
    0.938
CSIRO_1930
Hypothetical protein.
 
     0.933
CSIRO_1927
Iron-sulfur cluster-binding protein.
 
     0.908
CSIRO_1933
Putative formate dehydrogenase-specific chaperone.
 
    0.904
fdhD
Formate dehydrogenase chain D; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
 
 
 0.889
CSIRO_1935
Formate dehydrogenase-O, major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
   
 0.887
CSIRO_1936
Formate dehydrogenase-O, iron-sulfur subunit.
 
     0.883
CSIRO_1937
Formate dehydrogenase-O, gamma subunit.
 
     0.867
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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