Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
CSIRO_19464-carboxymuconolactone decarboxylase. (134 aa)    
Predicted Functional Partners:
CSIRO_3655
Hypothetical lactonase in carbon monoxide dehydrogenase cluster.
 
  
 0.982
CSIRO_3654
3-carboxy-cis,cis-muconate cycloisomerase.
 
 
 0.936
CSIRO_3987
Protocatechuate 3,4-dioxygenase beta chain.
 
 
 0.812
CSIRO_3986
Protocatechuate 3,4-dioxygenase alpha chain.
 
 
 0.771
CSIRO_3656
Beta-ketoadipate enol-lactone hydrolase.
     
  0.768
CSIRO_0034
Hypothetical protein.
     
 0.715
CSIRO_0714
Cation/multidrug efflux pump.
    
 0.668
CSIRO_1651
Hypothetical protein.
    
 0.664
CSIRO_1422
P-hydroxybenzoate hydroxylase.
 
   
 0.663
CSIRO_3670
Adenylosuccinate lyase; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.
  
 
 0.653
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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