STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1977Putative dioxygenase ferredoxin protein. (108 aa)    
Predicted Functional Partners:
CSIRO_3996
Ferredoxin reductase.
 
 0.983
CSIRO_2918
Nitrite reductase [NAD(P)H] large subunit.
  
 0.979
CSIRO_2123
Sulfide dehydrogenase flavoprotein chain precursor.
  
 0.940
CSIRO_1976
Hypothetical protein.
 
  
  0.897
CSIRO_1512
Siroheme synthase; Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD-dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme.
  
  
 0.885
CSIRO_2922
Assimilatory nitrate reductase large subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 
 0.840
CSIRO_0268
Glutamate synthase (NADPH) large chain.
  
 
 0.825
CSIRO_1974
Hypothetical protein.
    
  0.713
CSIRO_1975
Hypothetical protein.
    
  0.713
CSIRO_0338
Lead, cadmium, zinc and mercury transporting ATPase; Bifunctional.
   
  0.707
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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