Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_1978Hypothetical protein. (265 aa)    
Predicted Functional Partners:
CSIRO_0484
Biopolymer transport protein ExbD/TolR.
  
 0.846
CSIRO_1227
Biopolymer transport protein ExbD/TolR.
  
 0.846
CSIRO_3561
TonB-dependent receptor.
   
 0.818
tolQ
MotA/TolQ/ExbB proton channel family protein; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 0.790
CSIRO_1228
MotA/TolQ/ExbB proton channel family protein.
  
 0.790
CSIRO_0081
TonB-dependent receptor.
  
 0.780
CSIRO_2161
TonB-dependent hemin ferrichrome receptor.
  
 0.780
CSIRO_1448
5-methyltetrahydrofolate--homocysteine methyltransferase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
    
 0.704
CSIRO_0615
Nickel/cobalt-specific TonB-dependent outer membrane receptor.
  
 0.645
CSIRO_1230
TonB-dependent receptor.
  
 0.645
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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