STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_19833-hydroxyacyl-CoA dehydrogenase. (329 aa)    
Predicted Functional Partners:
CSIRO_1982
3-oxoacyl-(acyl-carrier protein) reductase.
 
  0.858
CSIRO_0682
acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  0.845
CSIRO_4044
3-hydroxyacyl-CoA dehydrogenase.
  
 0.844
CSIRO_1306
3-ketoacyl-CoA thiolase/ acetyl-CoA acetyltransferase; Bifunctional; Belongs to the thiolase-like superfamily. Thiolase family.
   
  0.821
CSIRO_0517
3-ketoacyl-CoA thiolase/ acetyl-CoA acetyltransferase; Bifunctional; Belongs to the thiolase-like superfamily. Thiolase family.
  
  0.792
CSIRO_1690
3-ketoacyl-CoA thiolase/ acetyl-CoA acetyltransferase; Bifunctional; Belongs to the thiolase-like superfamily. Thiolase family.
  
  0.790
CSIRO_1984
Acetoacetate decarboxylase.
     
 0.780
CSIRO_2533
acetyl-CoA C-acyltransferase/ acetyl-CoA acetyltransferase; Bifunctional; Belongs to the thiolase-like superfamily. Thiolase family.
  
  0.766
CSIRO_2221
Hypothetical protein.
   
  0.763
CSIRO_3431
acetyl-CoA acetyltransferase.
   
  0.763
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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