Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2008Polysaccharide deacetylase. (320 aa)    
Predicted Functional Partners:
CSIRO_2009
Cytosine deaminase.
 
     0.657
CSIRO_2007
Branched-chain amino acid ABC transporter amino acid-binding protein.
 
     0.586
CSIRO_2005
ABC transporter ATP-binding/permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
     0.555
CSIRO_2010
Transcriptional regulator, TetR family.
 
     0.527
CSIRO_2006
High-affinity branched-chain amino acid transport system permease protein; Belongs to the binding-protein-dependent transport system permease family.
       0.455
CSIRO_0506
Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate.
     
 0.413
CSIRO_3979
Pyruvate dehydrogenase E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
     
  0.409
CSIRO_3634
Dolichol-phosphate mannosyltransferase-like protein.
  
 
 0.407
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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