Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2019Transcriptional regulator, MarR family. (206 aa)    
Predicted Functional Partners:
CSIRO_2021
4-hydroxyphenylacetate 3-monooxygenase.
 
  
 0.871
CSIRO_2022
Hypothetical protein.
 
     0.862
CSIRO_2020
Nitrilotriacetate monooxygenase component B.
 
  
  0.634
tal
Transaldolase/ glucose-6-phosphate isomerase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
     
  0.599
CSIRO_1197
CHAD domain-containing protein.
  
     0.541
CSIRO_3866
Hypothetical protein.
  
     0.517
CSIRO_2028
Hypothetical protein.
 
     0.508
CSIRO_2987
Major facilitator superfamily protein.
  
     0.443
CSIRO_0686
Hypothetical protein.
  
     0.424
CSIRO_3407
Hypothetical protein; Belongs to the 4-oxalocrotonate tautomerase family.
  
     0.423
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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