STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2020Nitrilotriacetate monooxygenase component B. (141 aa)    
Predicted Functional Partners:
CSIRO_2021
4-hydroxyphenylacetate 3-monooxygenase.
 
 
 0.934
CSIRO_2022
Hypothetical protein.
 
     0.758
CSIRO_1851
Glyoxalase family protein.
  
 
  0.748
CSIRO_1249
Benzoyl-CoA oxygenase.
    
  0.661
CSIRO_2019
Transcriptional regulator, MarR family.
 
  
  0.649
CSIRO_0258
Riboflavin kinase/ FMN adenylyltransferase; Bifunctional; Belongs to the ribF family.
    
  0.633
CSIRO_3294
Riboflavin synthase alpha chain.
    
  0.619
CSIRO_1451
Hypothetical protein.
  
 
 0.572
CSIRO_1285
Integral membrane protein.
  
 
 0.484
CSIRO_2023
ABC-type transport system periplasmic substrate-binding protein.
       0.483
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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