CSIRO_2030 protein (Bradyrhizobiaceae bacterium SG6C)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

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a 3D structure is known or predicted

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co-expression

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[Homology]

Score

CSIRO_2030

Transcription accessory protein. (782 aa)

Predicted Functional Partners:

rpoA

0.875

rpoB

0.840

rpoZ

0.821

CSIRO_3728

0.819

rpsC

0.769

rpsS

0.748

rpsO

0.740

rplD

0.718

rpsQ

0.715

rpsE

0.707

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

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structured XML interaction data, according to the 'PSI-MI' data standard

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_2030	CSIRO_3728	CSIRO_2030	CSIRO_3728	Transcription accessory protein.	TolA protein.	0.819
CSIRO_2030	rplD	CSIRO_2030	CSIRO_3499	Transcription accessory protein.	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	0.718
CSIRO_2030	rpoA	CSIRO_2030	CSIRO_3476	Transcription accessory protein.	DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.875
CSIRO_2030	rpoB	CSIRO_2030	CSIRO_3514	Transcription accessory protein.	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.840
CSIRO_2030	rpoZ	CSIRO_2030	CSIRO_3322	Transcription accessory protein.	DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.821
CSIRO_2030	rpsC	CSIRO_2030	CSIRO_3494	Transcription accessory protein.	SSU ribosomal protein S3p; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.769
CSIRO_2030	rpsE	CSIRO_2030	CSIRO_3483	Transcription accessory protein.	SSU ribosomal protein S5p; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.707
CSIRO_2030	rpsO	CSIRO_2030	CSIRO_1127	Transcription accessory protein.	SSU ribosomal protein S15p; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.740
CSIRO_2030	rpsQ	CSIRO_2030	CSIRO_3491	Transcription accessory protein.	SSU ribosomal protein S17p; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.715
CSIRO_2030	rpsS	CSIRO_2030	CSIRO_3496	Transcription accessory protein.	SSU ribosomal protein S19p; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.	0.748
CSIRO_3728	CSIRO_2030	CSIRO_3728	CSIRO_2030	TolA protein.	Transcription accessory protein.	0.819
CSIRO_3728	rpoA	CSIRO_3728	CSIRO_3476	TolA protein.	DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.812
CSIRO_3728	rpoB	CSIRO_3728	CSIRO_3514	TolA protein.	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.808
CSIRO_3728	rpoZ	CSIRO_3728	CSIRO_3322	TolA protein.	DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.783
rplD	CSIRO_2030	CSIRO_3499	CSIRO_2030	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	Transcription accessory protein.	0.718
rplD	rpoA	CSIRO_3499	CSIRO_3476	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.987
rplD	rpoB	CSIRO_3499	CSIRO_3514	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.982
rplD	rpoZ	CSIRO_3499	CSIRO_3322	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.	0.932
rplD	rpsC	CSIRO_3499	CSIRO_3494	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S3p; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplD	rpsE	CSIRO_3499	CSIRO_3483	LSU ribosomal protein L4p; Forms part of the polypeptide exit tunnel.	SSU ribosomal protein S5p; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.999