Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2033Alkyldihydroxyacetonephosphate synthase. (493 aa)    
Predicted Functional Partners:
CSIRO_4200
Glycolate dehydrogenaseFAD-binding subunit.
 
  
  0.843
CSIRO_2662
NAD-dependent malic enzyme.
  
 
 0.720
xylB
Xylulose kinase.
 
   
 0.695
CSIRO_0268
Glutamate synthase (NADPH) large chain.
    
 0.692
CSIRO_2812
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
   
 0.659
CSIRO_1943
Tungsten-containing formate dehydrogenase beta subunit.
   
 0.617
CSIRO_0471
Glycolate dehydrogenase.
 
  
 
0.593
CSIRO_1560
Electron transfer flavoprotein alpha subunit.
  
 0.590
CSIRO_1927
Iron-sulfur cluster-binding protein.
    
  0.589
CSIRO_4199
Glycolate dehydrogenaseiron-sulfur subunit.
 
 
 0.580
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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