CSIRO_2067 protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene co-occurrence

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[Homology]

Score

CSIRO_2067

ABC transporter substrate-binding protein. (537 aa)

Predicted Functional Partners:

dppB

0.995

CSIRO_2069

0.995

CSIRO_2070

0.986

CSIRO_2422

0.981

CSIRO_2423

0.981

oppD

0.916

oppF

0.905

CSIRO_2900

0.866

pstS

0.864

CSIRO_4010

0.861

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_2067	CSIRO_2069	CSIRO_2067	CSIRO_2069	ABC transporter substrate-binding protein.	Putative dipeptide ABC transporter.	0.995
CSIRO_2067	CSIRO_2070	CSIRO_2067	CSIRO_2070	ABC transporter substrate-binding protein.	Putative dipeptide ABC transporter; Belongs to the ABC transporter superfamily.	0.986
CSIRO_2067	CSIRO_2422	CSIRO_2067	CSIRO_2422	ABC transporter substrate-binding protein.	Putative glutathione transporter, permease component.	0.981
CSIRO_2067	CSIRO_2423	CSIRO_2067	CSIRO_2423	ABC transporter substrate-binding protein.	Putative glutathione transporter, permease component.	0.981
CSIRO_2067	CSIRO_2900	CSIRO_2067	CSIRO_2900	ABC transporter substrate-binding protein.	ABC transporter, periplasmic substrate-binding protein.	0.866
CSIRO_2067	CSIRO_4010	CSIRO_2067	CSIRO_4010	ABC transporter substrate-binding protein.	ABC transporter permease protein.	0.861
CSIRO_2067	dppB	CSIRO_2067	CSIRO_2068	ABC transporter substrate-binding protein.	Dipeptide transport system permease protein DppB.	0.995
CSIRO_2067	oppD	CSIRO_2067	CSIRO_2419	ABC transporter substrate-binding protein.	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	0.916
CSIRO_2067	oppF	CSIRO_2067	CSIRO_2420	ABC transporter substrate-binding protein.	Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.	0.905
CSIRO_2067	pstS	CSIRO_2067	CSIRO_2502	ABC transporter substrate-binding protein.	Phosphate ABC transporter, periplasmic phosphate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.864
CSIRO_2069	CSIRO_2067	CSIRO_2069	CSIRO_2067	Putative dipeptide ABC transporter.	ABC transporter substrate-binding protein.	0.995
CSIRO_2069	CSIRO_2070	CSIRO_2069	CSIRO_2070	Putative dipeptide ABC transporter.	Putative dipeptide ABC transporter; Belongs to the ABC transporter superfamily.	0.998
CSIRO_2069	CSIRO_2422	CSIRO_2069	CSIRO_2422	Putative dipeptide ABC transporter.	Putative glutathione transporter, permease component.	0.995
CSIRO_2069	CSIRO_2900	CSIRO_2069	CSIRO_2900	Putative dipeptide ABC transporter.	ABC transporter, periplasmic substrate-binding protein.	0.812
CSIRO_2069	CSIRO_4010	CSIRO_2069	CSIRO_4010	Putative dipeptide ABC transporter.	ABC transporter permease protein.	0.602
CSIRO_2069	dppB	CSIRO_2069	CSIRO_2068	Putative dipeptide ABC transporter.	Dipeptide transport system permease protein DppB.	0.998
CSIRO_2069	oppD	CSIRO_2069	CSIRO_2419	Putative dipeptide ABC transporter.	Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.	0.997
CSIRO_2069	oppF	CSIRO_2069	CSIRO_2420	Putative dipeptide ABC transporter.	Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.	0.993
CSIRO_2069	pstS	CSIRO_2069	CSIRO_2502	Putative dipeptide ABC transporter.	Phosphate ABC transporter, periplasmic phosphate-binding protein PstS; Part of the ABC transporter complex PstSACB involved in phosphate import; Belongs to the PstS family.	0.530
CSIRO_2070	CSIRO_2067	CSIRO_2070	CSIRO_2067	Putative dipeptide ABC transporter; Belongs to the ABC transporter superfamily.	ABC transporter substrate-binding protein.	0.986