Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2071Hypothetical protein. (61 aa)    
Predicted Functional Partners:
CSIRO_2073
Hypothetical protein.
       0.837
CSIRO_2072
Amidase.
       0.830
CSIRO_2074
Transcriptional regulator, GntR family.
       0.822
CSIRO_2070
Putative dipeptide ABC transporter; Belongs to the ABC transporter superfamily.
       0.765
CSIRO_2069
Putative dipeptide ABC transporter.
       0.626
dppB
Dipeptide transport system permease protein DppB.
       0.536
CSIRO_2067
ABC transporter substrate-binding protein.
       0.512
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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