Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
soxWThioredoxin SoxW. (195 aa)    
Predicted Functional Partners:
soxS
Regulatory protein SoxS.
 
     0.920
CSIRO_2106
Lipocalin-like protein.
 
     0.882
soxY
Sulfur oxidation protein SoxY.
 
   
 0.832
soxZ
Sulfur oxidation protein SoxZ.
 
     0.810
soxA
Sulfur oxidation protein SoxA.
 
     0.806
soxV
Sulfur oxidation protein SoxV.
     
 0.795
soxC
Sulfur oxidation molybdopterin protein SoxC.
 
     0.792
soxB
Sulfur oxidation protein SoxB; Belongs to the 5'-nucleotidase family.
 
     0.787
soxD
Sulfite dehydrogenase cytochrome subunit SoxD.
 
     0.774
CSIRO_2104
Lipocalin-like protein.
 
     0.769
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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