Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
soxXSulfur oxidation protein SoxX. (214 aa)    
Predicted Functional Partners:
soxA
Sulfur oxidation protein SoxA.
 
 
 0.998
CSIRO_1723
Ubiquinol--cytochrome c reductase cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 0.993
soxY
Sulfur oxidation protein SoxY.
 
  
 0.976
soxZ
Sulfur oxidation protein SoxZ.
 
  
 0.968
soxD
Sulfite dehydrogenase cytochrome subunit SoxD.
 
 
 0.968
soxB
Sulfur oxidation protein SoxB; Belongs to the 5'-nucleotidase family.
 
  
 0.955
soxC
Sulfur oxidation molybdopterin protein SoxC.
 
 
 0.952
CSIRO_1722
Ubiquinol-cytochrome C reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 0.950
CSIRO_1322
Cytochrome c oxidase polypeptide III.
  
 0.943
CSIRO_1943
Tungsten-containing formate dehydrogenase beta subunit.
   
 0.935
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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