Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
soxYSulfur oxidation protein SoxY. (152 aa)    
Predicted Functional Partners:
soxZ
Sulfur oxidation protein SoxZ.
 
 
 0.997
soxA
Sulfur oxidation protein SoxA.
 
  
 0.987
soxB
Sulfur oxidation protein SoxB; Belongs to the 5'-nucleotidase family.
 
  
 0.982
soxX
Sulfur oxidation protein SoxX.
 
  
 0.976
soxC
Sulfur oxidation molybdopterin protein SoxC.
 
  
 0.975
soxD
Sulfite dehydrogenase cytochrome subunit SoxD.
 
  
 0.975
CSIRO_2123
Sulfide dehydrogenase flavoprotein chain precursor.
 
   
 0.867
soxW
Thioredoxin SoxW.
 
   
 0.832
CSIRO_4142
Thiosulfate sulfurtransferase, rhodanese.
     
 0.796
soxS
Regulatory protein SoxS.
 
   
 0.787
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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