Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2121Hypothetical protein. (37 aa)    
Predicted Functional Partners:
CSIRO_1723
Ubiquinol--cytochrome c reductase cytochrome B subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
  
 0.979
CSIRO_2123
Sulfide dehydrogenase flavoprotein chain precursor.
   
 0.970
ccoO
Cytochrome c oxidase subunit CcoO.
  
 0.908
ccoN
Cytochrome c oxidase subunit CcoN; Belongs to the heme-copper respiratory oxidase family.
  
 0.898
CSIRO_3420
Quino(hemo)protein alcohol dehydrogenase.
  
 0.864
CSIRO_2124
Cytochrome c2.
   
 0.813
soxD
Sulfite dehydrogenase cytochrome subunit SoxD.
  
 
 0.794
CSIRO_0729
Anaerobic dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
   
 0.782
CSIRO_1936
Formate dehydrogenase-O, iron-sulfur subunit.
   
 0.775
CSIRO_1722
Ubiquinol-cytochrome C reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
   
 0.758
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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