Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2122Hypothetical protein. (173 aa)    
Predicted Functional Partners:
CSIRO_2123
Sulfide dehydrogenase flavoprotein chain precursor.
 
     0.778
soxA
Sulfur oxidation protein SoxA.
 
   
 0.767
soxB
Sulfur oxidation protein SoxB; Belongs to the 5'-nucleotidase family.
 
     0.759
soxY
Sulfur oxidation protein SoxY.
 
    0.754
soxZ
Sulfur oxidation protein SoxZ.
 
    0.736
soxD
Sulfite dehydrogenase cytochrome subunit SoxD.
 
     0.733
soxC
Sulfur oxidation molybdopterin protein SoxC.
 
   
 0.729
soxX
Sulfur oxidation protein SoxX.
 
     0.704
CSIRO_2121
Hypothetical protein.
       0.694
soxW
Thioredoxin SoxW.
 
     0.682
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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