STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_21344-hydroxyphenylpyruvate dioxygenase. (374 aa)    
Predicted Functional Partners:
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
 
 0.989
CSIRO_2425
Biotin carboxylase.
  
 
 0.932
CSIRO_2131
Maleylacetoacetate isomerase/ glutathione S-transferase zeta class; Bifunctional.
 
  
 0.865
CSIRO_2327
methylmalonyl-CoA mutase.
    
 0.852
CSIRO_2329
methylmalonyl-CoA mutase.
    
 0.852
CSIRO_1029
Pterin-4-alpha-carbinolamine dehydratase.
  
  
 0.809
CSIRO_1851
Glyoxalase family protein.
    
 0.763
CSIRO_3432
Indolepyruvate ferredoxin oxidoreductase.
 
  
  0.753
CSIRO_3038
methylcrotonyl-CoA carboxylase carboxyl transferase subunit.
 
 
 0.726
CSIRO_3954
geranyl-CoA carboxylase carboxyl transferase subunit.
 
 
 0.710
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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