CSIRO_2149 protein (Bradyrhizobiaceae bacterium SG6C)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

CSIRO_2149

ferredoxin--NADP(+) reductase. (257 aa)

Predicted Functional Partners:

CSIRO_1399

0.744

CSIRO_2234

0.692

CSIRO_3420

0.662

paaN

0.644

paaI

0.548

paaG

0.547

paaH

0.524

CSIRO_2258

0.503

paaJ

0.502

CSIRO_1761

0.450

Your Current Organism:

Bradyrhizobiaceae bacterium SG6C

NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CSIRO_1399	CSIRO_2149	CSIRO_1399	CSIRO_2149	Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	ferredoxin--NADP(+) reductase.	0.744
CSIRO_1399	CSIRO_2234	CSIRO_1399	CSIRO_2234	Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Cytochrome P450.	0.438
CSIRO_1399	CSIRO_3420	CSIRO_1399	CSIRO_3420	Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Quino(hemo)protein alcohol dehydrogenase.	0.747
CSIRO_1399	paaN	CSIRO_1399	CSIRO_3109	Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase.	0.810
CSIRO_1761	CSIRO_2149	CSIRO_1761	CSIRO_2149	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	ferredoxin--NADP(+) reductase.	0.450
CSIRO_1761	CSIRO_2234	CSIRO_1761	CSIRO_2234	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	Cytochrome P450.	0.510
CSIRO_1761	CSIRO_2258	CSIRO_1761	CSIRO_2258	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	Fatty acid desaturase.	0.721
CSIRO_1761	paaN	CSIRO_1761	CSIRO_3109	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase.	0.665
CSIRO_2149	CSIRO_1399	CSIRO_2149	CSIRO_1399	ferredoxin--NADP(+) reductase.	Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.744
CSIRO_2149	CSIRO_1761	CSIRO_2149	CSIRO_1761	ferredoxin--NADP(+) reductase.	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	0.450
CSIRO_2149	CSIRO_2234	CSIRO_2149	CSIRO_2234	ferredoxin--NADP(+) reductase.	Cytochrome P450.	0.692
CSIRO_2149	CSIRO_2258	CSIRO_2149	CSIRO_2258	ferredoxin--NADP(+) reductase.	Fatty acid desaturase.	0.503
CSIRO_2149	CSIRO_3420	CSIRO_2149	CSIRO_3420	ferredoxin--NADP(+) reductase.	Quino(hemo)protein alcohol dehydrogenase.	0.662
CSIRO_2149	paaG	CSIRO_2149	CSIRO_3117	ferredoxin--NADP(+) reductase.	phenylacetate-CoA oxygenase, PaaG subunit.	0.547
CSIRO_2149	paaH	CSIRO_2149	CSIRO_3116	ferredoxin--NADP(+) reductase.	phenylacetate-CoA oxygenase, PaaH subunit.	0.524
CSIRO_2149	paaI	CSIRO_2149	CSIRO_3115	ferredoxin--NADP(+) reductase.	phenylacetate-CoA oxygenase, PaaI subunit.	0.548
CSIRO_2149	paaJ	CSIRO_2149	CSIRO_3114	ferredoxin--NADP(+) reductase.	phenylacetate-CoA oxygenase, PaaJ subunit.	0.502
CSIRO_2149	paaN	CSIRO_2149	CSIRO_3109	ferredoxin--NADP(+) reductase.	Phenylacetic acid degradation protein PaaN, ring-opening aldehyde dehydrogenase.	0.644
CSIRO_2234	CSIRO_1399	CSIRO_2234	CSIRO_1399	Cytochrome P450.	Proline dehydrogenase/ delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.438
CSIRO_2234	CSIRO_1761	CSIRO_2234	CSIRO_1761	Cytochrome P450.	Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.	0.510