Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2190TRAP transporter solute receptor, TAXI family precursor. (322 aa)    
Predicted Functional Partners:
CSIRO_2191
TRAP-like transport system fused permease component.
 
 
  0.969
CSIRO_1196
TRAP-type transport system protein.
 
 
  0.901
CSIRO_1373
TRAP transporter.
 
 
  0.901
CSIRO_2292
TRAP transporter.
 
 
  0.889
CSIRO_2365
Sensory box histidine kinase/response regulator.
    
  0.629
CSIRO_1637
TRAP dicarboxylate transporter DctM subunit.
  
  
  0.572
CSIRO_4002
TRAP-like C4-dicarboxylate transport system, large permease component.
  
  
  0.516
CSIRO_4004
TRAP-like C4-dicarboxylate transport system, periplasmic component.
  
  
 0.497
CSIRO_1374
DUF1850 domain-containing protein.
 
 
  0.469
CSIRO_2192
Hypothetical protein.
       0.467
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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