STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2198AttH component of AttEFGH ABC transport system. (362 aa)    
Predicted Functional Partners:
CSIRO_2197
AttF component of AttEFGH ABC transport system / AttG component of AttEFGH ABC transport system.
  
 0.976
CSIRO_2196
AttE component of AttEFGH ABC transport system.
 
   
 0.925
CSIRO_1761
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
   
 
 0.648
CSIRO_2199
Aldo/keto reductase.
       0.640
CSIRO_0464
Carotenoid cis-trans isomerase.
  
 
 0.625
CSIRO_4053
Beta-carotene ketolase.
  
 
 0.625
CSIRO_1722
Ubiquinol-cytochrome C reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
     
 0.621
CSIRO_2280
Phytoene desaturase.
     
 0.619
CSIRO_0823
Putative inner membrane protein.
  
  
 0.540
CSIRO_2195
Acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.490
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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