Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2203Hypothetical protein; Belongs to the D-glutamate cyclase family. (274 aa)    
Predicted Functional Partners:
CSIRO_2925
Allophanate hydrolase 2 subunit 1.
 
    0.931
CSIRO_2924
Allophanate hydrolase 2 subunit 2.
 
    0.903
lamB
Lactam utilization protein LamB; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
    0.881
CSIRO_2202
Transcriptional regulatory protein; Belongs to the LysR transcriptional regulatory family.
 
     0.801
CSIRO_2028
Hypothetical protein.
 
     0.652
CSIRO_2204
High-affinity leucine-specific transport system, periplasmic binding protein.
 
     0.646
CSIRO_2325
Pyrrolidone-carboxylate peptidase; Removes 5-oxoproline from various penultimate amino acid residues except L-proline.
  
    0.517
CSIRO_2207
Branched-chain amino acid transport ATP-binding protein; Overlaps another CDS with the same product name.
       0.443
CSIRO_2205
High-affinity branched-chain amino acid transport system permease; Belongs to the binding-protein-dependent transport system permease family.
       0.427
CSIRO_0399
Transcriptional regulator, IclR family.
  
    0.417
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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