STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2203Hypothetical protein; Belongs to the D-glutamate cyclase family. (274 aa)    
Predicted Functional Partners:
CSIRO_2925
Allophanate hydrolase 2 subunit 1.
 
    0.930
CSIRO_2924
Allophanate hydrolase 2 subunit 2.
 
    0.898
lamB
Lactam utilization protein LamB; Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.
 
    0.879
CSIRO_2202
Transcriptional regulatory protein; Belongs to the LysR transcriptional regulatory family.
 
     0.745
CSIRO_2204
High-affinity leucine-specific transport system, periplasmic binding protein.
 
     0.646
CSIRO_2028
Hypothetical protein.
 
     0.635
CSIRO_2325
Pyrrolidone-carboxylate peptidase; Removes 5-oxoproline from various penultimate amino acid residues except L-proline.
  
    0.454
CSIRO_2205
High-affinity branched-chain amino acid transport system permease; Belongs to the binding-protein-dependent transport system permease family.
       0.424
CSIRO_2207
Branched-chain amino acid transport ATP-binding protein; Overlaps another CDS with the same product name.
       0.424
CSIRO_2206
Branched-chain amino acid transport ATP-binding protein; Overlaps another CDS with the same product name; Belongs to the binding-protein-dependent transport system permease family.
       0.417
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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