STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2219Prolidase. (449 aa)    
Predicted Functional Partners:
CSIRO_0421
N-formylglutamate deformylase.
  
 
 0.919
CSIRO_3889
Arginase; Belongs to the arginase family.
  
 
 0.854
phnF
Transcriptional regulator PhnF.
  
 
 0.705
CSIRO_2079
Hypothetical protein.
    
  0.620
CSIRO_2009
Cytosine deaminase.
 
  
 0.595
CSIRO_0014
Amidohydrolase.
    
 0.519
CSIRO_0020
Methylthioadenosine deaminase.
    
 0.519
CSIRO_2222
Hypothetical protein.
 
     0.494
CSIRO_4229
Transcriptional regulator, IclR family.
 
  
 0.491
CSIRO_2220
Short-chain alcohol dehydrogenase-like dehydrogenase.
       0.484
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.