Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2223Glycosyl transferase. (391 aa)    
Predicted Functional Partners:
CSIRO_2224
Hypothetical protein.
 
     0.889
CSIRO_2225
Hypothetical protein.
 
     0.688
CSIRO_3677
DNA-binding HTH domain-containing protein.
  
     0.672
CSIRO_2234
Cytochrome P450.
  
 0.669
CSIRO_1004
Cytochrome P450 family protein.
  
 0.665
CSIRO_1194
Hypothetical protein; Belongs to the cytochrome P450 family.
  
 0.665
CSIRO_3111
Putative cytochrome P450 hydroxylase.
  
 0.665
CSIRO_4275
Putative cytochrome P450 hydroxylase.
  
 0.665
CSIRO_3865
Hypothetical protein.
  
     0.656
CSIRO_2226
Hypothetical protein.
 
     0.638
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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