Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2227Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. (302 aa)    
Predicted Functional Partners:
CSIRO_2228
Hypothetical protein.
       0.773
CSIRO_1912
Transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.707
CSIRO_2229
Alcohol dehydrogenase.
       0.574
CSIRO_0424
Hydrogen peroxide response regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.525
CSIRO_2563
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.502
CSIRO_3423
Hydrogen peroxide response regulator; Belongs to the LysR transcriptional regulatory family.
  
     0.494
rpoZ
DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
 
 
 0.450
yeiE
Transcriptional regulator YeiE; Belongs to the LysR transcriptional regulatory family.
  
     0.447
CSIRO_0268
Glutamate synthase (NADPH) large chain.
     
 0.442
CSIRO_3408
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.417
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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