Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2232Hypothetical protein. (530 aa)    
Predicted Functional Partners:
CSIRO_2231
Hypothetical protein.
 
     0.890
CSIRO_2812
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
    
 0.766
CSIRO_2241
Hypothetical protein.
 
     0.745
CSIRO_2690
Hypothetical protein.
 
     0.744
CSIRO_1987
Hypothetical protein.
 
     0.736
CSIRO_1190
Saccharopine dehydrogenase.
  
     0.734
CSIRO_2233
Epoxide hydrolase.
       0.732
CSIRO_3473
Hypothetical protein.
  
     0.724
CSIRO_2234
Cytochrome P450.
 
 
 0.690
CSIRO_1651
Hypothetical protein.
  
  
  0.685
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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