STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2257Altronate hydrolase. (507 aa)    
Predicted Functional Partners:
CSIRO_2256
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
  0.893
CSIRO_2255
YbiC-like oxidoreductase; Belongs to the LDH2/MDH2 oxidoreductase family.
 
  
 0.854
CSIRO_2270
2-dehydro-3-deoxygluconate kinase.
 
  
 0.825
CSIRO_0721
Enolase superfamily protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
  
 0.771
CSIRO_2258
Fatty acid desaturase.
       0.729
CSIRO_2259
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
 
   
 0.696
CSIRO_2518
Putative pyridoxine biosynthesis protein.
 
     0.667
CSIRO_1152
Fructokinase.
    
 0.666
CSIRO_4154
Dihydrodipicolinate synthase; Belongs to the DapA family.
    
 0.652
CSIRO_3427
Dihydrodipicolinate synthase; Belongs to the DapA family.
 
  
 0.645
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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