Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2258Fatty acid desaturase. (323 aa)    
Predicted Functional Partners:
CSIRO_2234
Cytochrome P450.
    
 0.765
CSIRO_2257
Altronate hydrolase.
       0.730
CSIRO_0392
Fatty acid desaturase; Bifunctional.
   
 0.664
CSIRO_2259
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
       0.664
CSIRO_1761
Electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
   
 
 0.642
CSIRO_0140
Putative sterol desaturase.
  
 
 0.633
CSIRO_4275
Putative cytochrome P450 hydroxylase.
 
  
 0.627
CSIRO_4286
Adenylate cyclase.
  
 
 0.591
CSIRO_3963
Hypothetical protein.
  
     0.590
CSIRO_1911
Nitroreductase.
  
   
 0.565
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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