STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CSIRO_2275Hypothetical protein. (489 aa)    
Predicted Functional Partners:
CSIRO_0272
TPR domain-containing protein.
 
 
 0.742
hemE
Uroporphyrinogen III decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
     
 0.635
CSIRO_2276
NAD(FAD)-utilizing dehydrogenase.
  
    0.625
CSIRO_2277
Phytoene synthase.
 
   
 0.609
CSIRO_2281
Squalene--hopene cyclase.
 
   
 0.596
CSIRO_2279
Phytoene synthase.
 
  
 0.591
CSIRO_2278
Phytoene synthase.
 
  
 0.586
CSIRO_2280
Phytoene desaturase.
 
     0.586
CSIRO_3842
Glycosyltransferase.
 
 
 0.549
CSIRO_3406
TPR repeat-containing protein.
 
  
  0.540
Your Current Organism:
Bradyrhizobiaceae bacterium SG6C
NCBI taxonomy Id: 709797
Other names: B. bacterium SG-6C, Bradyrhizobiaceae bacterium SG-6C
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.